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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">JM</journal-id><journal-title-group>
    <journal-title>Journal of Micropalaeontology</journal-title>
    <abbrev-journal-title abbrev-type="publisher">JM</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">J. Micropalaeontol.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">2041-4978</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/jm-43-139-2024</article-id><title-group><article-title>Two new clavate <italic>Fragilariopsis</italic> and one new <italic>Rouxia</italic> diatom species with biostratigraphic and paleoenvironmental applications for the Pliocene-Pleistocene, East Antarctica</article-title><alt-title>U1361 new diatom taxa</alt-title>
      </title-group><?xmltex \runningtitle{U1361 new diatom taxa}?><?xmltex \runningauthor{G. Duke et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Duke</surname><given-names>Grace</given-names></name>
          <email>grace.duke93@gmail.com</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Frazer</surname><given-names>Josie</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0743-7769</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Taylor-Silva</surname><given-names>Briar</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Riesselman</surname><given-names>Christina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2436-4306</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Geology, University of Otago, Dunedin,  9016, New Zealand</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Marine Science, University of Otago, Dunedin,  9016, New Zealand</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Grace Duke (grace.duke93@gmail.com)</corresp></author-notes><pub-date><day>12</day><month>June</month><year>2024</year></pub-date>
      
      <volume>43</volume>
      <issue>1</issue>
      <fpage>139</fpage><lpage>163</lpage>
      <history>
        <date date-type="received"><day>18</day><month>July</month><year>2023</year></date>
           <date date-type="rev-recd"><day>22</day><month>December</month><year>2023</year></date>
           <date date-type="accepted"><day>19</day><month>March</month><year>2024</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 Grace Duke et al.</copyright-statement>
        <copyright-year>2024</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024.html">This article is available from https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024.html</self-uri><self-uri xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024.pdf">The full text article is available as a PDF file from https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e116">Three new pennate diatom taxa, <italic>Fragilariopsis clava</italic> sp. nov. Duke; <italic>Fragilariopsis armandae</italic> sp. nov. Frazer, Duke et Riesselman; and <italic>Rouxia raggattensis</italic> sp. nov. Duke et Riesselman, are described and named from Pliocene-Pleistocene sediments collected from the continental rise adjacent to the Wilkes Land coast of East Antarctica. The stratigraphic occurrence of <italic>F. clava</italic> and <italic>F. armandae</italic> at IODP Site U1361 are well-constrained to Marine Isotope Stages G9-G7 (2.76–2.74 Ma) and 101–97 (2.58–2.47 Ma), respectively.  The short stratigraphic ranges of <italic>F. clava</italic> and <italic>F. armandae</italic> are potentially useful biostratigraphic markers for constraining the age of late Pliocene to Early Pleistocene Antarctic sediments.  <italic>Rouxia raggattensis</italic> is observed in the oldest sample examined at Site U1361 from <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">4.05</mml:mn></mml:mrow></mml:math></inline-formula> Ma and is more common between 3.0–2.15 Ma.  The rise in abundance of <italic>R. raggattensis</italic> corresponds to a large turnover in diatom species between 3 and 2 Ma associated with Antarctic cooling, suggesting that sea surface conditions were favorable for <italic>R. raggattensis</italic> during this dynamic time.  Clavate <italic>Fragilariopsis</italic> species diversified between 2.9–2.7 Ma, but some species quickly went extinct between 2.7–2.5 Ma, possibly because they were marginalized by the cooler climate conditions.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Marsden Fund</funding-source>
<award-id>UOO-1315</award-id>
</award-group>
<award-group id="gs2">
<funding-source>Ministry for Business Innovation and Employment</funding-source>
<award-id>ANTA1801</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e173">Documenting the diatom assemblage of the Southern Ocean during the Pliocene and Pleistocene provides a proxy for past environmental conditions and stratigraphic age datums <xref ref-type="bibr" rid="bib1.bibx5 bib1.bibx53 bib1.bibx33 bib1.bibx2 bib1.bibx4 bib1.bibx27 bib1.bibx14" id="paren.1"><named-content content-type="pre">e.g.,</named-content></xref>.  Environmental preferences of fossil taxa are based on the study of extant species, with the assumption that their preferences have remained constant through time <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx18 bib1.bibx17 bib1.bibx42" id="paren.2"/>, and their co-occurrence with other taxa and environmental proxies <xref ref-type="bibr" rid="bib1.bibx58" id="paren.3"><named-content content-type="pre">e.g.,</named-content></xref>.  Cosmopolitan diatom species are not useful environmental indicators but can be excellent age indicators if they are well preserved and have well-constrained first and last stratigraphic appearances. Early literature synthesized the first and last appearances of diatom species relative to paleomagnetic reversals and other chronostratigraphic constraints to create diatom zones, establishing a framework to determine the relative ages of sedimentary sequences <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx23 bib1.bibx21 bib1.bibx32 bib1.bibx47" id="paren.4"><named-content content-type="pre">e.g.,</named-content></xref>. Later work refined the sequence of biostratigraphic events and reconciled published ages to create a more robust biochronology that is applicable across multiple Southern Ocean sites <xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx12 bib1.bibx16" id="paren.5"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e200">Valve measurements of <italic>Fragilariopsis clava</italic> sp. nov., <italic>Fragilariopsis armandae</italic>,  and other clavate <italic>Fragilariopsis</italic> taxa.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Species</oasis:entry>
         <oasis:entry colname="col2">Length</oasis:entry>
         <oasis:entry colname="col3">Major width</oasis:entry>
         <oasis:entry colname="col4">Minor width</oasis:entry>
         <oasis:entry colname="col5">Absolute</oasis:entry>
         <oasis:entry colname="col6">Costae per</oasis:entry>
         <oasis:entry colname="col7">Original reference</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(<inline-formula><mml:math id="M6" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M7" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col4">(<inline-formula><mml:math id="M8" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col5">proportional</oasis:entry>
         <oasis:entry colname="col6">10 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m</oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">difference</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. clava</italic></oasis:entry>
         <oasis:entry colname="col2">31–66,</oasis:entry>
         <oasis:entry colname="col3">8–12,</oasis:entry>
         <oasis:entry colname="col4">4.7–10.5,</oasis:entry>
         <oasis:entry colname="col5">0.13–0.43,</oasis:entry>
         <oasis:entry colname="col6">6–12, average <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">99</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">113</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">99</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">110</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. armandae</italic></oasis:entry>
         <oasis:entry colname="col2">32–85</oasis:entry>
         <oasis:entry colname="col3">8–11</oasis:entry>
         <oasis:entry colname="col4">2–5</oasis:entry>
         <oasis:entry colname="col5">0.46–0.75</oasis:entry>
         <oasis:entry colname="col6">10–13</oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">43</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">62</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">45</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">44</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">63</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F.</italic> c.f. <italic>armandae</italic><inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">59–85</oasis:entry>
         <oasis:entry colname="col3">9–10</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">0.66–0.71</oasis:entry>
         <oasis:entry colname="col6">9–10</oasis:entry>
         <oasis:entry colname="col7">Bohaty (2003)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. heardensis</italic></oasis:entry>
         <oasis:entry colname="col2">35–71,</oasis:entry>
         <oasis:entry colname="col3">8–12,</oasis:entry>
         <oasis:entry colname="col4">1.0–3.7,</oasis:entry>
         <oasis:entry colname="col5">0.62–0.90,</oasis:entry>
         <oasis:entry colname="col6">11–15,</oasis:entry>
         <oasis:entry colname="col7">Bohaty (2003)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">51</mml:mn><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">72</mml:mn><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">56</mml:mn><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">52</mml:mn><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mn mathvariant="normal">76</mml:mn><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><italic>F. clementia</italic></oasis:entry>
         <oasis:entry colname="col2">35–75</oasis:entry>
         <oasis:entry colname="col3">6–8</oasis:entry>
         <oasis:entry colname="col4">2</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">10–12</oasis:entry>
         <oasis:entry colname="col7">Gombos (1976)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><italic>F. lacrima</italic></oasis:entry>
         <oasis:entry colname="col2">21–60</oasis:entry>
         <oasis:entry colname="col3">7–12</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:msup><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.76</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">10–12</oasis:entry>
         <oasis:entry colname="col7">Gersonde (1989)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><italic>F. efferans</italic></oasis:entry>
         <oasis:entry colname="col2">26–54</oasis:entry>
         <oasis:entry colname="col3">7–10</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>–5<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">6–7</oasis:entry>
         <oasis:entry colname="col7">Schrader (1976)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. claviceps</italic></oasis:entry>
         <oasis:entry colname="col2">37–45</oasis:entry>
         <oasis:entry colname="col3">9–10</oasis:entry>
         <oasis:entry colname="col4">6–7</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">7–8</oasis:entry>
         <oasis:entry colname="col7">Schrader (1976)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e212"><inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> Combination of specimens from U1361A and five specimens measured from Plate 2 (Figs. 1, 4–7) of Bohaty et al. (2003). <inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Reclassified specimens from Bohaty et al. (2003) Plate 2 (Figs. 2–3) and Plate 3 (Fig. 9), originally classified as <italic>F. heardensis</italic>. <inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> Three specimens from Plate 8 (Fig. 19) of Gombos (1976) and Plate 2 (Figs. 11–10) of Bohaty et al. (2003). <inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> Five specimens measured from Plate 2 (Figs. 1, 3, 5, 6) of Schrader (1976) and Plate 2 (Fig. 9) of Gersonde and Burkle (1990). <italic>F. lacrima</italic> and<italic> F. clementia</italic> data are from Gersonde (1989), and <italic>F. efferans</italic> and <italic>F. claviceps</italic> data are from Schrader (1976).</p></table-wrap-foot><?xmltex \gdef\@currentlabel{1}?></table-wrap>

      <?xmltex \floatpos{p}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e996">ODP and IODP site locations. Map of Antarctica shows the location of Southern Ocean sites that document the presence of clavate <italic>Fragilariopsis</italic> species (red dots).  Site U1361 is distinguished with a yellow dot.  Further detail about each site is given in Appendix A Table <xref ref-type="table" rid="App1.Ch1.S1.T4"/>. </p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f01.png"/>

      </fig>

      <?pagebreak page140?><p id="d1e1011">Here, we propose three new Southern Ocean diatom taxa, <italic>Fragilariopsis clava</italic> Duke; <italic>Fragilariopsis armandae</italic> Frazer, Duke et Riesselman; and <italic>Rouxia raggattensis</italic> Duke et Riesselman, all of which are useful as environmental indicators and biostratigraphic datums.  <italic>Fragilariopsis clava</italic> and <italic>F. armandae</italic> appear briefly between 2.76–2.75 Ma (55.59–55.30 m b.s.f.) and 2.58–2.47 Ma (49.57–47.13 m b.s.f.), respectively, at IODP Site U1361 on the Wilkes Land continental rise, East Antarctica, and have not previously been identified in Antarctic sediments.  <italic>Fragilariopsis clava</italic> and <italic>F. armandae</italic> succeed a lineage of Pliocene clavate  diatoms, bolstering the biostratigraphic capability of this suite of species.  <italic>Rouxia raggattensis</italic> was first documented as <italic>Rouxia</italic> sp. A by Harwood and Maruyama (1992) in Pliocene sediments from Site 751 on the Kerguelen Plateau and subsequently identified in Plio-Pleistocene sediments from ANDRILL Site AND-1B, south of Ross Island on the Ross Sea continental shelf <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx45" id="paren.6"/>.  However, the species could not be formally described from either of these locations due to low abundance and the rarity of complete specimens.  Because <italic>R. raggattensis</italic> is common and well-preserved at Site U1361, it is now possible to fully characterize the species and speculate about its environmental affinities.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e1051"><italic>Rouxia raggattensis</italic> and <italic>R. diploneides</italic> morphometric measurements.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.98}[.98]?><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="left"/>
     <oasis:colspec colnum="8" colname="col8" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Species (apex)</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">Length (<inline-formula><mml:math id="M41" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col4">Transapical</oasis:entry>
         <oasis:entry colname="col5">Apical length</oasis:entry>
         <oasis:entry colname="col6">Raphe length</oasis:entry>
         <oasis:entry colname="col7">Apical width</oasis:entry>
         <oasis:entry colname="col8">Costae per</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">width (<inline-formula><mml:math id="M42" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col5">(<inline-formula><mml:math id="M43" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) (<inline-formula><mml:math id="M44" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col6">(<inline-formula><mml:math id="M45" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) (<inline-formula><mml:math id="M46" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)</oasis:entry>
         <oasis:entry colname="col8">10 <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><italic>R. raggattensis</italic></oasis:entry>
         <oasis:entry colname="col2">spatulate</oasis:entry>
         <oasis:entry colname="col3">120–201, <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">44</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">3.0–5.0, <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">44</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">17–27 (80)</oasis:entry>
         <oasis:entry colname="col6">14–23 (80)</oasis:entry>
         <oasis:entry colname="col7">5–8 (80)</oasis:entry>
         <oasis:entry colname="col8">12–15, <inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">60</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">rounded</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">17–26 (68)</oasis:entry>
         <oasis:entry colname="col6">15–23 (68)</oasis:entry>
         <oasis:entry colname="col7">3–7 (71)</oasis:entry>
         <oasis:entry colname="col8"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>R. diploneides</italic></oasis:entry>
         <oasis:entry colname="col2">left<inline-formula><mml:math id="M52" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">40–97,<inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">4–6, <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">21</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">13–20 (19)</oasis:entry>
         <oasis:entry colname="col6">11–17 (18)</oasis:entry>
         <oasis:entry colname="col7">4–8 (20)</oasis:entry>
         <oasis:entry colname="col8">11–13, <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">right*</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">13–19 (20)</oasis:entry>
         <oasis:entry colname="col6">10–16 (20)</oasis:entry>
         <oasis:entry colname="col7">5–8 (20)</oasis:entry>
         <oasis:entry colname="col8"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.98}[.98]?><table-wrap-foot><p id="d1e1059"><inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> The apices for a <italic>R. diploneides</italic> specimen were arbitrarily denoted as “left” and “right” based on its orientation in a field of view because, unlike <italic>R. raggattensis</italic>, there is no distinction between apices. The morphometric measurements for the “left” and “right” apices remain separate to emphasize they are comparable.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?><?xmltex \gdef\@currentlabel{2}?></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1400">Measuring the dimensions of the valve face provides quantitative comparison between species.  Measurements of <italic>R. raggattensis</italic>, <italic>F. armandae</italic>, and <italic>F. clava</italic> are given in Tables <xref ref-type="table" rid="Ch1.T1"/> and <xref ref-type="table" rid="Ch1.T2"/> and displayed graphically in Figs. <xref ref-type="fig" rid="Ch1.F7"/> and <xref ref-type="fig" rid="Ch1.F13"/>. </p></caption><alt-text>New Taxa morphometrics</alt-text>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f02.png"/>

      </fig>

</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Method and material</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>U1361A sediment samples</title>
      <p id="d1e1444">Sample material was collected during IODP Expedition 318 in 2010 from Site U1361 (64.45° S, 143.90° E) at 3454 m water depth <xref ref-type="bibr" rid="bib1.bibx19" id="paren.7"/>. The site is located on a levee along the continental rise of Wilkes Land, an area of the East Antarctic margin that is currently influenced by winter sea ice and Antarctic Bottom Water formation (Fig. <xref ref-type="fig" rid="Ch1.F1"/>).  The<?pagebreak page141?> Wilkes Land margin is of interest because the East Antarctic Ice Sheet is grounded below sea level in the adjacent Wilkes Subglacial Basin, rendering it susceptible to the impact of relatively warm waters intruding onto the continental shelf <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx5 bib1.bibx55" id="paren.8"/>.  Sediment was sampled at approximately 10 cm resolution from 90.64–29.54 m b.s.f., and lithologies range from varied-colored clay to greenish-gray diatom-rich or <?xmltex \hack{\mbox\bgroup}?>-bearing<?xmltex \hack{\egroup}?> silty clay <xref ref-type="bibr" rid="bib1.bibx19" id="paren.9"/>.  The interval is dated to approximately 3.9–1.7 Ma based on biostratigraphic datums, and paleomagnetic reversal stratigraphy is used to date an iceberg-rafted debris mass accumulation record <xref ref-type="bibr" rid="bib1.bibx19 bib1.bibx38 bib1.bibx51" id="paren.10"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Expedition 383 samples</title>
      <p id="d1e1474">To support the comparison of our new taxa to established <italic>Fragilariopsis</italic> species, <italic>F. clementia</italic> is discussed in Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/> (Fig. <xref ref-type="fig" rid="Ch1.F14"/>).  New light micrographs of <italic>F. clementia</italic> were produced from IODP sites U1541 and U1543 material to provide example specimens from the Pacific sector of the Southern Ocean.  Sites U1541 (54.28° S, 125.47° W) and U1543 (54.59° S, 76.73° W) were drilled during Expedition 383 in 2019 at 3604 m water depth on the East Pacific Rise <xref ref-type="bibr" rid="bib1.bibx56" id="paren.11"/> and 3860 m water depth about 110 nmi southwest of the Chile coast <xref ref-type="bibr" rid="bib1.bibx29" id="paren.12"/>, respectively.  Two slides from Site U1541C core 11 were examined for <italic>F. clementia</italic>: U1541C-11H3 20–21 cm and U1541C-11H5 20–21 cm.  Micrographs from Site U1543A core 23 were made from four slides: U1543A-23H4 120 cm,  U1543A-23H5 120 cm,  U1543A-23H6 120 cm, and U1543A-23HCC 18–24 cm.   These slides were prepared aboard the <italic>JOIDES Resolution</italic> during Expedition 383 following the smear slide procedure outlined in <xref ref-type="bibr" rid="bib1.bibx57" id="text.13"/>.  The approximate ages of specimens in Fig. <xref ref-type="fig" rid="Ch1.F14"/> are based on the age models from <xref ref-type="bibr" rid="bib1.bibx56" id="text.14"/> and <xref ref-type="bibr" rid="bib1.bibx29" id="text.15"/>.</p>
</sec>
<?pagebreak page142?><sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Diatom analysis</title>
      <p id="d1e1523">The new taxa were characterized using light microscopy and scanning electron microscopy.  For diatom assemblage analysis with light microscopy, quantitative settled slides were prepared following the method of <xref ref-type="bibr" rid="bib1.bibx54" id="text.16"/>.  For each slide, 35–50 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g of bulk sediment was weighed for samples with high biogenic silica (<inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> wt  % BSi) and 60–70 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g for samples with low biogenic silica.  The weighed sediment was placed in a glass test tube with 2 mL of 10 % hydrogen peroxide and two drops of saturated sodium hexametaphosphate and left for a minimum of 8 h in a 40 °C oven.</p>
      <p id="d1e1555">Duplicate slides were prepared by affixing two <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mn mathvariant="normal">22</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">40</mml:mn></mml:mrow></mml:math></inline-formula> mm glass cover slips to a clean glass microscope slide with a drop of rubber cement and placing them on a PLEXIGLAS platform approximately 2 cm above the outlet of a 2 L square B-Ker2 settling chamber, partially filled with Elix pure water.  Once the slide with cover slips was positioned, the water in the settling chamber was topped up to 2 L and gently agitated.  A drop of Kodak Photo-Flo surfactant dispersing agent was added to the sample tube before the sample slurry was dispersed into the chamber.  The sample settled out of the water column for a minimum of 6 h before the valve was opened, allowing the water to drain at <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> drops per second overnight.  Next, the slide and attached cover slips were removed from the chamber and allowed to dry, after which each cover slip was removed from the rubber cement and mounted sediment-side-down on a fresh glass slide using a few drops of Norland Optical Adhesive #61 (refractive index <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.56</mml:mn></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e1590"><italic>Fragilariopsis clava</italic> and <italic>Fragilariopsis armandae</italic> were counted on an Olympus BX41 microscope with a 10x eyepiece using a 60x objective.  <italic>Rouxia raggattensis</italic> in samples 56.53–29.54 m b.s.f. was counted using the same microscope configuration as for the <italic>Fragilariopsis</italic> counts, while samples from 84.94–56.53 m b.s.f. were counted on an Olympus BX41 microscope with a 10x eyepiece using a 63x objective <xref ref-type="bibr" rid="bib1.bibx53" id="paren.17"/>.  When further identification was needed, the objective was changed to 100x.  Images of specimens were taken using a 63x and a 100x objective, and the scale was adjusted to match when images were placed in the same figure.  Fields of view (FOV) were tallied, and counts were converted to absolute abundance (AA), reported in valves per gram of dry sediment, using the equation of <xref ref-type="bibr" rid="bib1.bibx54" id="text.18"/>:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M62" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="normal">AA</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mtext>Number of diatom counts</mml:mtext><mml:mrow><mml:mtext>Number of FOV</mml:mtext><mml:mo>⋅</mml:mo><mml:mtext>FOV area </mml:mtext><mml:mo>(</mml:mo><mml:msup><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>⋅</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mtext>Beaker area </mml:mtext><mml:mo>(</mml:mo><mml:msup><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow><mml:mtext>Dry sediment mass (g)</mml:mtext></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Light microscope observations are supported by scanning electron microscope (SEM) images produced on a ZEISS Sigma FEG-SEM at the University of Otago Centre for Electron Microscopy.  To prepare SEM slides, 2 mL of hydrogen peroxide and a drop of sodium hexametaphosphate were mixed with approximately 50 mg of sediment in a centrifuge tube and left overnight in a 40 °C oven.  Sediment was rinsed with Elix pure water and dried before diatoms were separated from the terrigenous fraction by heavy-liquid separation.  Material was centrifuged with sodium polytungstate mixed to a density of 2.15 g cm<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>  to prevent clay particulates from covering the finer details of the diatom frustules.  The sample was rinsed and stored in 50 mg Elix pure water. Several drops of the slurry were dried on a glass slide before the slide was gold-coated for SEM observation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1687">Species age ranges. The age ranges of clavate <italic>Fragilariopsis</italic> species, <italic>R. raggattensis</italic>, and <italic>R. diploneides</italic> were approximated using Site U1361 data, published abundance records from sites noted in Table <xref ref-type="table" rid="App1.Ch1.S1.T3"/>, and <xref ref-type="bibr" rid="bib1.bibx11" id="text.19"/>.  The black lines denote the estimated age range in which more than three sites record a presence of a species.  To test the robustness of this estimate, it was compared to the average range model from Cody et al (2008), a probabilistic determination that calculated an average position of biostratigraphic events, for <italic>F. clementia</italic>, <italic>F. lacrima</italic>, <italic>F. claviceps</italic>, and <italic>R. diploneides</italic>.  The dashed line indicates when a species is present at one to three sites.  The question mark over the dashed red line shows when rare <italic>F. efferans</italic> specimens are identified in the Pliocene <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx9" id="paren.20"/>.  The “x” denotes Marine Isotope Stage G7, the single interglacial period in which  <italic>F. clava</italic> was identified at Site U1361. </p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e1735"><italic>Fragilariopsis clava</italic> light micrographs. The scale bar for all images is 10 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m.  The IODP sample identifier is given for each <italic>Fragilariopsis clava</italic> sp. nov. Duke. <bold>(a)</bold> U1361A-6H7 32–34 cm. <bold>(b)</bold> U1361A-6H7 32–34 cm. <bold>(c)</bold> U1361A-6H7 32–34 cm. <bold>(d)</bold> Paratype: U1361A-6H7 32–34 cm. Asymmetry along apical axis as minor apex deflects from apical axis. <bold>e)</bold> U1361A-6H7 32–34 cm. <bold>(f)</bold> U1361A-6H7 32–34 cm. <bold>(g)</bold> U1361A-6H7 32–34 cm. <bold>(h)</bold> U1361A-6H7 32–34 cm. <bold>(i)</bold> Holotype: U1361A-6H7 32–34 cm. <bold>(j)</bold> U1361A-6H7 32–34 cm. <bold>(k)</bold> U1361A-6H7 32–34 cm. <bold>(l)</bold> U1361A-6H7 42–44 cm. <bold>(m)</bold> U1361A-6H7 32–34 cm. Costae may appear finer but are still within defined <italic>F. clava</italic> range. <bold>(n)</bold> U1361A-6H7 32–34 cm. <bold>(o)</bold> U1361A-6H7 42–44 cm. <bold>(p)</bold> U1361A-6H7 12–14 cm. <bold>(q)</bold> U1361A-6H7 32–34 cm. <bold>(r)</bold> U1361A-6H7 32–34 cm. <bold>(s)</bold> U1361A-6H7 32–34 cm. <bold>(t)</bold> Paratype: U1361A-6H7 12–14 cm. Constricted center, but apices are more proportionally equal in comparison to holotype. <bold>(u)</bold> U1361A-6H7 42–44 cm. </p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Diatom morphometric measurements</title>
      <p id="d1e1835"><italic>Fragilariopsis clava</italic>, <italic>Fragilariopsis armandae</italic>, and <italic>Rouxia raggattensis</italic> morphometric measurements, defined in Fig. <xref ref-type="fig" rid="Ch1.F2"/>, were systematically measured using ImageJ software (Schneider et al., 2012) in order to quantitatively compare the new taxa to pre-existing species in Tables <xref ref-type="table" rid="Ch1.T1"/> and <xref ref-type="table" rid="Ch1.T2"/>. The degree of symmetry between apices is a crucial defining characteristic that separates <italic>F. clava</italic> from related taxa.  We have established a metric that captures the absolute proportional difference of apices to define this characteristic, with values ranging between 0–1:
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M65" display="block"><mml:mrow><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mtext>absolute proportional difference</mml:mtext><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><?xmltex \hack{\quad}?><mml:mo mathsize="2.0em">|</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mtext>width of minor apex</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mtext>width of major apex</mml:mtext><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>(</mml:mo><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo mathsize="2.0em">|</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          An absolute proportional difference of 0 equates to symmetrical apical widths, whereas values approaching 1 indicate a high degree of asymmetry.  For clavate <italic>Fragilariopsis<?pagebreak page143?></italic> species, we defined the narrower and wider apices as the minor and major apices, respectively.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
      <p id="d1e1928">Three new fossil diatom species are described from Pliocene and Pleistocene material collected at IODP Site U1361.  New taxa are differentiated from one another and from established species based on morphometric measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e1933"><italic>Fragilariopsis clava</italic> scanning electron micrographs. All specimens from U1361A-6H7 32–34 cm.  <bold>(a)</bold> Interior valve face with <bold>(c–d)</bold> close-up views of the constricted center and minor apex and <bold>(b)</bold> detail of the flap-like occlusions (arrow).  Panels <bold>(a)</bold>, <bold>(c)</bold>, and <bold>(d)</bold> display the discontinuous areolae within striae. Panel <bold>(e)</bold> shows the exterior view of the minor apex, and panel <bold>(f)</bold> highlights the raphe (arrow) terminating along the valve edge. </p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f05.jpg"/>

      </fig>

<sec id="Ch1.S3.SS1">
  <label>3.1</label><?xmltex \opttitle{\textit{Fragilariopsis clava} Duke sp. nov.}?><title><italic>Fragilariopsis clava</italic> Duke sp. nov.</title>
      <?pagebreak page144?><p id="d1e1979"><italic>Diagnosis.</italic> The valve is clavate, heteropolar, and slightly panduriform.  Apices are broadly rounded, and the wide and bulbous major apex tapers to a slightly constricted center and an oblong minor apex.  Transapical striae are regularly spaced, curving and branching at the apices, with biseriate transitioning to uniseriate towards the major apex and poroids parallel or alternating (Figs. <xref ref-type="fig" rid="Ch1.F5"/>b and c; <xref ref-type="fig" rid="Ch1.F6"/>a, c, and e).  Striation is occasionally disrupted by patch hyaline fields.  The raphe is straight and threadlike along the edge of the exterior valve face and terminates at apices with slightly deflected ends (Figs. <xref ref-type="fig" rid="Ch1.F5"/>f; <xref ref-type="fig" rid="Ch1.F6"/>d and f).  Based on SEM images of well-preserved specimens, areolae are occluded by an unperforated silica membrane and are attached to the pore wall except for a curved slit opening (Figs. <xref ref-type="fig" rid="Ch1.F5"/>b; <xref ref-type="fig" rid="Ch1.F6"/>b).  These flap-like occlusions are referred to as foriculae by <xref ref-type="bibr" rid="bib1.bibx15" id="text.21"><named-content content-type="post">Figs. 19 and 24</named-content></xref> and as volate occlusions by <xref ref-type="bibr" rid="bib1.bibx31" id="text.22"><named-content content-type="post">Fig. 31</named-content></xref>.</p>
      <p id="d1e2007"><italic>Dimensions.</italic> The length is 31–66 <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 48.5 <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), the major apex width is 8–12 <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 10 <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), and the minor apex width is. 4.7–10.5 <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 7.6 <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) (Table <xref ref-type="table" rid="Ch1.T1"/>). There are 6–12 costae per 10 <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean density: 7–9) (Fig. <xref ref-type="fig" rid="Ch1.F4"/>; Table <xref ref-type="table" rid="Ch1.T1"/>).</p>
      <p id="d1e2075"><italic>Holotype.</italic> This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F4"/>i, U1361A-6H7 32–34 cm. The type level and age for the specimen is late Pliocene at 55.49 m b.s.f. (CSF-B) in Hole U1361A.  Accession # 47688 is curated by the Geology Department, University of Otago, NZ.</p>
      <p id="d1e2083"><italic>Paratype.</italic> This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F4"/>t, U1361A-6H7 12–14 cm, and d, U136A-6H7 32–34 cm.  Accession # 47689 for specimen (t) and # 47690 for specimen (d) are curated by the Geology Department, University of Otago, NZ.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2092"><italic>Fragilariopsis clava</italic> scanning electron micrographs. All specimens from U1361A-6H7 32–34 cm.  The exterior valve face is displayed in panels <bold>(a)</bold>, <bold>(c)</bold>, and <bold>(e)</bold>. The raphe (arrows) runs along the outer edge of the valve face, ending at the major apex as seen in panels <bold>(d)</bold> and <bold>(f)</bold>, which are close-ups of panels <bold>(c)</bold> and <bold>(e)</bold>, respectively. Panel <bold>(b)</bold> highlights preserved perforated membranes (arrows) from the specimen shown in panel <bold>(a)</bold>. </p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f06.jpg"/>

        </fig>

      <p id="d1e2131"><italic>Locality.</italic> The specimens are located at the Wilkes Land continental rise, East Antarctica.</p>
      <?pagebreak page145?><p id="d1e2136"><italic>Stratigraphic occurrence.</italic>  The first and last appearances of <italic>Fragilariopsis clava</italic> overlap with the <italic>Thalassiosira vulnifica–Thalassiosira insignia</italic> diatom zone, which <xref ref-type="bibr" rid="bib1.bibx23" id="text.23"/> defined as ranging from the first appearance of <italic>T. vulnifica</italic> around 3.1 Ma and to the last appearance of <italic>T. insignia</italic> around 2.5 Ma.</p>
      <p id="d1e2156"><italic>Age.</italic> <italic>F. clava</italic> was only observed in samples from a narrow depth range, 55.59–55.30 m b.s.f. at Site U1361, correlating to a single interglacial interval, MIS G7 (2.76–2.75 Ma), based on the age model of <xref ref-type="bibr" rid="bib1.bibx38" id="text.24"/>.</p>
      <p id="d1e2168"><italic>Derivation of name.</italic> <italic>Fragilariopsis clava</italic> is named using the Latin word for club or staff, “clava”, in reference to its club-like shape.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e2178"><italic>F. clava</italic> morphometrics. <italic>Fragilariopsis clava</italic> (blue circles) and <italic>F. armandae</italic> (green squares) morphometric measurements are compared to other clavate species in panels <bold>(a–d)</bold>: <italic>F. heardensis</italic> (pink line and markers), <italic>F. clementia</italic> (solid green line), <italic>F. lacrima</italic> (dashed green line), <italic>F. efferans</italic> (solid black line), and <italic>F. claviceps</italic> (dashed black line).   <bold>(a)</bold> The minor apex width is compared to the total specimen length, <bold>(b)</bold> the major apex width is compared to the total specimen length, <bold>(c)</bold> the minor apex width is compared to the major apex width, and <bold>(d)</bold> the number of costae per 10 <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m is compared to the total specimen length. Panel <bold>(e)</bold> displays the number of costae per 10 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m to the absolute proportional difference of <italic>F. clava</italic>, <italic>F. armandae</italic>, and <italic>F. heardensis</italic>.  Examples of <italic>F. heardensis</italic> are shown from U1361 (pink triangles) and <xref ref-type="bibr" rid="bib1.bibx6" id="text.25"><named-content content-type="post">pink crosses</named-content></xref> (pink crosses).  We suggest that specimens identified as <italic>F. heardensis</italic> in Bohaty et al. (2003) Plate 2 (Figs. 2 and 3) and Plate 3 (Fig. 9) (green crosses) should be reclassified as <italic>F. armandae</italic> or <italic>F.</italic> c.f. <italic>armandae</italic>.   <italic>Fragilariopsis clava</italic> is distinguished from other Pliocene species in panels <bold>(a)</bold>, <bold>(c)</bold>, and <bold>(e)</bold> by its broader minor apex and coarse costae. </p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f07.png"/>

        </fig>

      <?pagebreak page146?><p id="d1e2289"><italic>Remarks.</italic> <italic>Fragilariopsis</italic> is a large genus defined by a flat, usually linear valve face with rounded valve poles; parallel striae with radiation at apices; and a simple raphe positioned between the valve face and the proximal mantle <xref ref-type="bibr" rid="bib1.bibx43" id="paren.26"/>.   <italic>Fragilariopsis clava</italic> has morphological affinities to an established lineage <xref ref-type="bibr" rid="bib1.bibx6" id="paren.27"/> comprising the clavate <italic>Fragilariopsis</italic> species <italic>F. heardensis</italic> Bohaty 2003 <xref ref-type="bibr" rid="bib1.bibx6" id="paren.28"/>, <italic>F. clementia</italic> Gombos 1976 <xref ref-type="bibr" rid="bib1.bibx22" id="paren.29"/>, <italic>F. lacrima</italic> Gersonde 1991 <xref ref-type="bibr" rid="bib1.bibx20" id="paren.30"/>, <italic>F. claviceps</italic> Schrader 1976 <xref ref-type="bibr" rid="bib1.bibx47" id="paren.31"/>, and <italic>F. efferans</italic> Schrader 1976 <xref ref-type="bibr" rid="bib1.bibx47" id="paren.32"/>.  The <italic>F. clava</italic> holotype exhibits a broad valve outline and apices and a constricted center  (Fig. <xref ref-type="fig" rid="Ch1.F4"/>i).  The smaller paratype exhibits the same broad valve outline, coarse costae, and constricted center as the holotype, but the absolute proportional difference between apices is smaller, so valve heteropolarity is less pronounced  (Fig. <xref ref-type="fig" rid="Ch1.F4"/>t).   The elongate paratype has a deflected minor apex (Fig. <xref ref-type="fig" rid="Ch1.F4"/>d).</p>
      <p id="d1e2351"><italic>Fragilariopsis clava</italic> shares a similar heteropolar outline to <italic>F. heardensis</italic> and <italic>F. clementia</italic>, with one inflated major apex and a narrower minor apex.  However, <italic>F. clava</italic> is more robust than <italic>F. heardensis</italic>, with coarser costae and a broader shape, and <italic>F. clava</italic> has more bluntly rounded apices than <italic>F. clementia</italic> (Fig. <xref ref-type="fig" rid="Ch1.F15"/>).  <italic>Fragilariopsis clava</italic> has a smaller proportional difference (0.13–0.43, <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula>) than <italic>F. heardensis</italic> (0.56–0.87, <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula>) and <italic>F. clementia</italic> (<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.7</mml:mn></mml:mrow></mml:math></inline-formula>) (Table <xref ref-type="table" rid="Ch1.T1"/>).</p>
      <p id="d1e2423">Figure <xref ref-type="fig" rid="Ch1.F7"/> compares the morphologies of <italic>F. clava</italic> and related species.  When <xref ref-type="bibr" rid="bib1.bibx6" id="text.33"/> first identified <italic>F. heardensis</italic> in sediments from the Kerguelen Plateau, the authors compared it to other taxa with clavate outlines: Pliocene species <italic>F. clementia</italic> and <italic>F. lacrima</italic> and Miocene species <italic>F. efferans</italic> and <italic>F. claviceps</italic>.  The morphometric differences are most apparent when comparing the proportions of their outlines.  All species are heteropolar, but <italic>F. clementia</italic>, <italic>F. lacrima</italic>, and <italic>F. efferans</italic> have a large proportional difference like <italic>F. heardensis</italic>.  <italic>Fragilariopsis claviceps</italic> clusters with <italic>F. clava</italic>, demonstrating their shared coarse costae and low proportional difference (Fig. <xref ref-type="fig" rid="Ch1.F7"/>a and c).</p>
      <p id="d1e2472">Rare <italic>F. clava</italic> specimens have 11–12 costae per 10 <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (Fig. <xref ref-type="fig" rid="Ch1.F15"/>g).  <italic>Fragilariopsis</italic> c.f. <italic>clementia</italic> at Site U1361 may be a transitional form between <italic>F. clementia</italic> and <italic>F. clava</italic>, with angular apices, coarse costae, and a broad outline resulting in a smaller proportional difference (Fig. <xref ref-type="fig" rid="Ch1.F15"/>e and f; see Sect. 4.1 for further discussion).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e2505"><italic>Fragilariopsis armandae</italic> and <italic>F. heardensis</italic> light micrographs. The scale bar for all images is 10 <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m.  The IODP sample identifier is given for each of the following specimens. <bold>(a–b)</bold> <italic>F. armandae</italic>, U1361A-6H1 12–14 cm. <bold>(c)</bold> <italic>F. armandae</italic>, U1361A-6H1 142–144 cm. <bold>(d–e)</bold> <italic>F. armandae</italic>, U1361A-6H1 12–14 cm. <bold>(f)</bold> Holotype: <italic>F. armandae</italic>, U1361A-6H1 12–14 cm. <bold>(g)</bold> <italic>F. armandae</italic>, U1361A-6H2 42–44 cm. <bold>(h)</bold> <italic>F. armandae</italic>, U1361A-6H2 112–114 cm. <bold>(i)</bold> <italic>F. armandae</italic>, U1361A-6H2 92–94 cm. <bold>(j)</bold> <italic>F. armandae</italic>, U1361A-6H2 62–64 cm. <bold>(k)</bold> Paratype: <italic>F. armandae</italic>, U1361A-6H2 2–4 cm. <bold>(l)</bold> <italic>F. armandae</italic>, U1361A-6H2 52–54 cm. <bold>(m)</bold> <italic>F. heardensis</italic>, U1361A-6H2 42–44 cm. <bold>(n)</bold> <italic>F. heardensis</italic>, U1361A-6H2 92–94 cm. <bold>(o)</bold> <italic>F. heardensis</italic>, U1361A-6H1 12–14 cm. <bold>(p)</bold> <italic>F. heardensis</italic>, U1361A-6H2 82–84 cm. <bold>(q)</bold> <italic>F. heardensis</italic>, U1361A-6H1 132–134 cm. <bold>(r)</bold> <italic>F. heardensis</italic>, U1361A-6H1 12–14 cm. <bold>(s)</bold> <italic>F. heardensis</italic>, U1361A-6H1 142–144 cm. <bold>(t)</bold> <italic>F. heardensis</italic>, U1361A-6H2 92–94 cm. </p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f08.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><?xmltex \opttitle{\textit{Fragilariopsis armandae} Frazer, Duke et Riesselman sp. nov.}?><title><italic>Fragilariopsis armandae</italic> Frazer, Duke et Riesselman sp. nov.</title>
      <p id="d1e2653"><italic>Diagnosis.</italic> The valve is clavate and heteropolar.  Apices are blunt and rounded, and the domed major apex constricts to a medial bulge and narrower minor apex.  There are two endmembers: biundulate, longer valves with a slight medial bulge, narrow minor apex, and rounder apices (e.g., Fig. <xref ref-type="fig" rid="Ch1.F8"/>a–d) and shorter valves with a constricted center and blunter apices (e.g., Fig. <xref ref-type="fig" rid="Ch1.F8"/>i–l).  Medial striae are transapical, curved, and branched towards the apices and are uniseriate, at times discontinuous (Table 1; e.g., Fig. <xref ref-type="fig" rid="Ch1.F8"/>d).  The raphe is straight<?pagebreak page147?> and threadlike along the edge of the exterior valve face (Fig. <xref ref-type="fig" rid="Ch1.F9"/>b and c).  The raphe ends simply at the major apex and deflects towards the valve face at the minor apex.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e2668"><italic>Fragilariopsis armandae</italic> scanning electron micrographs. All specimens from U1361A-6H1 12–14 cm. <bold>(a)</bold> Exterior valve face with irregular, uniseriate areolae. The raphe runs along the outer edge of the valve face, ending at the major apex as seen in panel <bold>(b)</bold> and the minor apex in panel <bold>(c)</bold>, which are close-ups of panel <bold>(a)</bold>. </p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f09.jpg"/>

        </fig>

      <p id="d1e2691"><italic>Dimensions.</italic> The length is 32.85–86.40 <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 57.27 <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), the major apex width is 8.09–10.70 <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 9.40 <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), and the minor apex width is 2.23–5.16 <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean: 3.59 <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) There are 10–13 costae per 10 <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (Table <xref ref-type="table" rid="Ch1.T1"/>).</p>
      <p id="d1e2756"><italic>Holotype.</italic> This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F8"/>f, U1361A-6H1, 12–14 cm.  The type level and age for the specimen is late Pliocene at 47.13 m b.s.f. (CSF-B) in Hole U1361A.  Accession # 47691 is curated by the Geology Department, University of Otago, NZ.</p>
      <p id="d1e2763"><italic>Paratype.</italic> This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F8"/>k, U1361A-6H2 2–4 cm.  Accession # 47692 is curated by the Geology Department, University of Otago, NZ.</p>
      <p id="d1e2770"><italic>Locality.</italic> The specimens are located at the Wilkes Land continental rise, East Antarctica.</p>
      <?pagebreak page148?><p id="d1e2775"><italic>Stratigraphic occurrence.</italic>  The range of <italic>F. armandae</italic> bridges the <italic>Thalassiosira vulnifica</italic>–<italic>T. insignia</italic> and <italic>T. vulnifica</italic> diatom zones.  <xref ref-type="bibr" rid="bib1.bibx23" id="text.34"/> defined the lower boundary of the <italic>T. vulnifica</italic> diatom zone as the last appearance of <italic>T. insignia</italic> around 2.5 Ma and the upper boundary as the last appearance of <italic>T. vulnifica</italic> around 2.2 Ma.</p>
      <p id="d1e2805"><italic>Age.</italic> <italic>F. armandae</italic> is observed in samples from depths of 49.57–47.13 m b.s.f. which correspond approximately to MIS 101 and 97 (<inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.58</mml:mn></mml:mrow></mml:math></inline-formula>–2.47 Ma).</p>
      <p id="d1e2823"><italic>Derivation of name.</italic> <italic>Fragilariopsis armandae</italic> is named in honor of the late Dr. Leanne Armand in recognition of her seminal contributions to the field of Southern Ocean diatom micropaleontology and her deep and selfless commitment to the advancement of our community.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e2834"><italic>Rouxia raggattensis</italic> light micrographs. The 10 <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m scale bar in the upper half of the figure applies to whole <italic>R. raggattensis</italic> specimens <bold>(a–h)</bold> and the <italic>Rouxia diploneides</italic> in <bold>(y)</bold>, and the 10 <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m scale bar in the bottom left applies to <italic>R. raggattensis</italic> apices <bold>(i–x)</bold>.  <bold>(a)</bold> Holotype: U1361A-6H7 32–34 cm. Panels <bold>(aii–v)</bold> show the apices at different focuses. <bold>(b)</bold> U1361A-5H2 132–134 cm. <bold>(c, d)</bold> U1361A-6H7 32–34 cm. <bold>(e)</bold> U1361A-6H1 132–134 cm. <bold>(f)</bold> U1361A-6H7 32–34 cm. <bold>(g)</bold> U1361A-6H7 42–44 cm, preserved chain of <italic>Rouxia raggattensis</italic>. <bold>h)</bold> U1361A-6H7 32–34 cm exemplifies the long length of <italic>Rouxia raggattensis</italic>, which is rarely preserved intact. <bold>(i)</bold> U1361A-6H1 132–134 cm. <bold>(j)</bold> U1361A-6H1 132–134 cm. <bold>(k)</bold> U1361A-6H1 132–134 cm. <bold>(l)</bold> U1361A-6H1 132–134 cm. <bold>(m)</bold> U1361A-6H4 120–122 cm. <bold>(n)</bold> U1361A-6H2 82–84 cm. <bold>(o)</bold> U1361A-6H2 82–84 cm. <bold>(p)</bold> U1361A-6H1 132–134 cm. <bold>(q)</bold> U1361A-6H1 132–134 cm. <bold>(r)</bold> U1361A-6H4 120–122 cm. <bold>(s)</bold> U1361A-6H1 132–134 cm. <bold>(t)</bold> U1361A-6H4 120–122 cm. <bold>(u)</bold> U1361A-6H4 120–122 cm. <bold>(v)</bold> U1361A-6H4 120–122 cm. <bold>(w)</bold> U1361A-6H1 132–134 cm. <bold>(x)</bold> U1361A-6H4 21–23 cm. <bold>(y)</bold> U1361A-4H6 2–4 cm, <italic>Rouxia diploneides</italic>. Apices are isopolar, and the center is only slightly narrower than apices. </p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f10.jpg"/>

        </fig>

      <?pagebreak page149?><p id="d1e2969"><italic>Remarks.</italic>  The holotype of <italic>F. armandae</italic> exhibits discontinuous poroids and a blunt major apex that constricts to a slight medial bulge and a narrow minor apex.   The paratype has a lower absolute proportional difference than the holotype and a valve face with nearly straight sides as they taper to the minor apex.  The minor apex width, absolute proportional difference, and medial bulge distinguish <italic>F. armandae</italic> from the most similar clavate <italic>Fragilariopsis</italic> species, <italic>F. clava</italic> and <italic>F. heardensis</italic>.  <italic>Fragilariopsis armandae</italic> clusters between <italic>F. clava</italic> and <italic>F. heardensis</italic> when their absolute proportional difference and minor apex width is compared (Fig. <xref ref-type="fig" rid="Ch1.F7"/>e).  <italic>Fragilariopsis armandae</italic> has a robust clavate valve shape similar to <italic>F. clava</italic> but, unlike <italic>F. clava</italic>, it is uniseriate, and it has discontinuous poroids and finer costae.  The blunter, almost flat apices of <italic>F. armandae</italic> further separate the shorter endmember of this species (e.g., Fig. <xref ref-type="fig" rid="Ch1.F8"/>i and j) from short specimens of <italic>F. clava </italic>(e.g., Fig. <xref ref-type="fig" rid="Ch1.F4"/>q), which are similarly proportioned.  The longer endmember of <italic>F. armandae</italic> is distinguishable from long specimens of <italic>F. clava</italic> by its medial bulge and the arrangement of its poroids.</p>
      <p id="d1e3028"><italic>Fragilariopsis armandae</italic> is differentiated from <italic>F. heardensis</italic> by its lower absolute proportional difference, slightly coarser striation, and discontinuous poroids. The major apex of the <italic>F. heardensis</italic> holotype from <xref ref-type="bibr" rid="bib1.bibx6" id="text.35"><named-content content-type="post">shown in Fig. <xref ref-type="fig" rid="Ch1.F15"/></named-content></xref> is blunt like the wide apex of <italic>F. armandae</italic>, but the sides of the valve face do not constrict when narrowing to the smaller apex.  Three specimens identified as <italic>F. heardensis</italic> by<?pagebreak page150?> Bohaty et al. (2003) and displayed in their Plate 2 (Figs. 2 and 3) and Plate 3 (Fig. 9) have valve shapes, coarser costae, wider minor apices, and longer lengths more similar to  <italic>F. armandae</italic> than <italic>F. heardensis</italic> (Table <xref ref-type="table" rid="Ch1.T1"/> and Fig. <xref ref-type="fig" rid="Ch1.F7"/>).  See Sect. 4.1 for further discussion.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e3064"><italic>Rouxia raggattensis</italic> scanning electron micrographs. All specimens from U1361A-6H7 32–34 cm. Panels <bold>(b–e)</bold> are close-ups of the interior valve face shown in panel <bold>(a)</bold>, and panels <bold>(g–i)</bold> are close-ups of the exterior valve face in panel <bold>(f)</bold>. Panels <bold>(b–c)</bold>, <bold>(e)</bold>, and <bold>(i)</bold> are the spatulate apex, and panels <bold>(d)</bold> and <bold>(f)</bold> show the rounded apex. Panels <bold>(b–d)</bold> show the keyhole-shaped alveolar openings which decrease in size towards the apices where the raphe terminates. Panel <bold>(e)</bold> displays the perforated membrane of the alveolate striae (arrow). Panel <bold>(h)</bold> highlights the marginal ridge (dashed arrow <italic>i</italic>), rows of pores (dashed arrow <italic>ii</italic>), and ovular impressions (dashed arrow <italic>iii</italic>). </p></caption>
          <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f11.jpg"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><?xmltex \opttitle{\textit{Rouxia raggattensis} Duke et Riesselman sp. nov.}?><title><italic>Rouxia raggattensis</italic> Duke et Riesselman sp. nov.</title>
      <p id="d1e3133"><italic>Synonymy.</italic> Synonyms are <italic>Rouxia</italic> sp. A in <xref ref-type="bibr" rid="bib1.bibx23" id="text.36"/>, Plate 17 Fig. 11, and <italic>Rouxia</italic> sp. A of Harwood and Maruyama in <xref ref-type="bibr" rid="bib1.bibx40" id="text.37"/>, Fig. 5.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><?xmltex \def\figurename{Figure}?><label>Figure 12</label><caption><p id="d1e3152"><italic>Rouxia raggattensis</italic>, <italic>R. antarctica</italic>, <italic>R. isopolica</italic>, and <italic>R. leventerae</italic> scanning electron micrographs. All specimens from U1361A-6H7 32–34 cm.  Dissolution of <italic>R. raggattensis</italic> <bold>(a)</bold> exterior and <bold>(b)</bold> interior valve face reveals the frustule structure between surfaces. Panel <bold>(a)</bold> highlights the marginal ridge (dashed arrow <italic>i</italic>), rows of pores (dashed arrow <italic>ii</italic>), and ovular impressions (dashed arrow <italic>iii</italic>). <bold>(c)</bold> <italic>Rouxia antarctica</italic> interior view and <bold>(d)</bold> example of keyhole-shaped alveoli from <italic>R. antarctica</italic>.  White arrows in panels <bold>(e)</bold> and <bold>(f)</bold> point to keyhole-shaped alveoli in <italic>R. isopolica</italic> and <italic>R. leventerae</italic>, respectively. Panel <bold>(g)</bold> exhibits the exterior view of <italic>R. antarctica</italic>, and panel <bold>(h)</bold> is a close-up of an apex which displays features similar to <italic>R. raggattensis</italic>. </p></caption>
          <?xmltex \igopts{width=327.206693pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f12.jpg"/>

        </fig>

      <p id="d1e3232"><italic>Diagnosis.</italic>  The valve is long and bilobate (Fig. <xref ref-type="fig" rid="Ch1.F10"/>a–f). One apex is cuneate and spatulate (Fig. <xref ref-type="fig" rid="Ch1.F10"/>p–x), and the other is narrow and rounded (Fig. <xref ref-type="fig" rid="Ch1.F10"/>i–o).  Apices are connected by a long, semi-convex central hyaline bar, perforated by rows of marginal pores (Fig. <xref ref-type="fig" rid="Ch1.F10"/>a–f). The raphe is simple and threadlike with simple ends (Figs. <xref ref-type="fig" rid="Ch1.F10"/>; <xref ref-type="fig" rid="Ch1.F11"/>b–d and h–i).</p>
      <p id="d1e3251">Information about the striae, alveoli, and silica structure was determined by SEM imaging (Fig. <xref ref-type="fig" rid="Ch1.F11"/>).  Striae are alveolate, consisting of a single elongate chamber with a wider semicircular medial end (keyhole-shaped; Fig. <xref ref-type="fig" rid="Ch1.F11"/>b–e).  The elongated section is perforated by two rows of fine pores on the Site U1361 specimen (Fig. <xref ref-type="fig" rid="Ch1.F11"/>e) and by three to four rows on specimens from AND-1B (Riesselman and Dunbar, 2013, Fig. 5 panels 7 and 8). The distribution of pores at the semicircular end is more disorganized and irregular (Fig. <xref ref-type="fig" rid="Ch1.F11"/>e).  Alveoli towards the tip of the apex are smaller and have no circular end (Fig. <xref ref-type="fig" rid="Ch1.F11"/>c and d), and, in the central bar, alveoli are oblong.  The exterior marginal ridge is narrower than the interior valve face (Fig. <xref ref-type="fig" rid="Ch1.F11"/>g–i).  The pores on the edge of the exterior valve face align with the center of the alveoli on the interior valve face (Figs. <xref ref-type="fig" rid="Ch1.F11"/>g–i; <xref ref-type="fig" rid="Ch1.F12"/>a and b).  Faint circular impressions run parallel to the pores on the external valve face and align with the medial ends of the interior alveoli (Figs. <xref ref-type="fig" rid="Ch1.F11"/>g–h; <xref ref-type="fig" rid="Ch1.F12"/>b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><?xmltex \def\figurename{Figure}?><label>Figure 13</label><caption><p id="d1e3277"><italic>R. raggattensis</italic> and <italic>R. diploneides</italic> morphometrics. <italic>R. raggattensis</italic> morphometrics (blue circles) are compared to those of <italic>R. diploneides</italic> (red squares) (see Fig. <xref ref-type="fig" rid="Ch1.F2"/>). <bold>(a)</bold> The apex length is compared to the length of the raphe on the apex, <bold>(b)</bold> the length of one apex is compared to the length of the other, <bold>(c)</bold> the apex length is compared to its width, and <bold>(d)</bold> the total specimen length is compared to the transapical width.  <italic>Rouxia raggattensis</italic> spatulate apices are shown as open circles, whereas the rounded apices are solid circles.  The apices on a single specimen have a nearly symmetrical length for both <italic>R. raggattensis</italic> and <italic>R. diploneides</italic>, but the <italic>R. raggattensis</italic> spatulate apex is wider than its rounded apex, and, in general, <italic>R. diploneides</italic> is smaller and has shorter apices than <italic>R. raggattensis</italic>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f13.png"/>

        </fig>

      <p id="d1e3331"><italic>Dimensions.</italic>  The length is 120–201 <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean 161.5 <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), the medial width is 3.1–5.2 <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (mean 4.15 <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m), the spatulate apex length is 17.5–26.1 <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, the spatulate raphe length is 14.4–22.3 <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, the spatulate apex width is 5.1–8.2 <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, the rounded apex length is 17.8–25.8 <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, the rounded raphe length is 15.3–23.0 <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m, and the rounded apex width is 3.4–7.1 <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. There are 12–15 costae per 10 <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m (Table <xref ref-type="table" rid="Ch1.T2"/>).</p>
      <p id="d1e3428"><italic>Holotype.</italic> This can be seen in Fig. <xref ref-type="fig" rid="Ch1.F10"/>a, U1361A-6H7 32–34 cm. The age and type level for the holotype specimen is late Pliocene at 55.49 m b.s.f. (CSF-B) in Hole U1361A.  Accession # 47693 is curated by the Geology Department, University of Otago, NZ.</p>
      <p id="d1e3435"><italic>Locality.</italic> The specimens are located at the Wilkes Land continental rise, East Antarctica.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><?xmltex \def\figurename{Figure}?><label>Figure 14</label><caption><p id="d1e3443">Example <italic>F. clementia</italic> specimens from around the Southern Ocean. The figure exemplifies the morphological range in <italic>Fragilariopsis clementia</italic> observed around the Southern Ocean based on published (source provided above specimens) and unpublished specimen examples.  From left to right, specimens from Hole U1543A are from samples <bold>(a)</bold> U1543A-23H4 120 cm, <bold>(b)</bold> U1543A-23H4 120 cm, <bold>(c)</bold> U1543A-23H5 120 cm, <bold>(d)</bold> U1543A-23H6 120 cm, and <bold>(e)</bold> U1543A-23HCC 18–24 cm.  Specimens from Hole U1541C are from two samples: panels <bold>(f–i)</bold> are from U1541C-11H3 20–21 cm, and panels <bold>(j–k)</bold> are from U1541C-11H5 20–21 cm.  <italic>F.</italic> c.f. <italic>clementia</italic> specimens from Hole U1361A are from sample U1361A-8H3 72–74 cm.  Specimens from Site ODP 1092 are reprinted from the Proceedings of the Ocean Drilling Program, Vol. 45, Censarek and Gersonde. Miocene diatom biostratigraphy at ODP sites 689, 690, 1088, and 1092 (Atlantic sector of the Southern Ocean), pages 309–356, © 2023, are reprinted with permission from Elsevier.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f14.png"/>

        </fig>

      <p id="d1e3486"><italic>Age.</italic> Shipboard biostratigraphy from IODP Exp. 318 Site U1361 Hole A identified <italic>R. raggattensis</italic> apices (as <italic>Rouxia</italic> sp. spatulate, long heteropolar) in sample 10HCC 19–24 cm (94.94–94.99 m b.s.f. CSF-B; Escutia et al., 2011), placing the species in sediment as old as 4.06 Ma <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx52" id="paren.38"/>.  The last occurrence of <italic>R. raggattensis</italic> at Site U1361 was identified in sample 5H1 2–4 cm (37.53 m b.s.f. CSF-B), which corresponds to <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.06</mml:mn></mml:mrow></mml:math></inline-formula> Ma.  <italic>Rouxia raggattensis</italic> has previously been documented as <italic>Rouxia</italic> sp. A Harwood and Maruyama in the late Pliocene (3.6–3.0 Ma) sediments from ANDRILL Site AND-1B (see Sect. 4.2 for more detail).</p>
      <p id="d1e3520"><italic>Derivation of name.</italic> <italic>Rouxia raggattensis</italic> is named for the Raggatt Basin on the Kerguelen Plateau, where David Harwood and Toshiaki Maruyama first documented this species from late Pliocene sediments collected during ODP Leg 120 from Site 751A <xref ref-type="bibr" rid="bib1.bibx23" id="paren.39"><named-content content-type="post">Plate 17 Fig. ll</named-content></xref>.</p>
      <p id="d1e3533"><italic>Remarks.</italic> Complete specimens of <italic>R. raggattensis</italic> are rarely preserved because the long narrow central bar is fragile; however, apical fragments are common.  The holotype displays distinct and clear examples of the spatulate and rounded apices attached by a narrow semi-convex central bar.  <italic>Rouxia diploneides</italic> <xref ref-type="bibr" rid="bib1.bibx46" id="text.40"/> has a similar valve outline to <italic>R. raggattensis</italic>, where the two apices taper below the end of the raphe to a narrower central bar.  However, <italic>R. diploneides</italic> is isopolar, the valve center is only slightly narrower than the apices, and the total length is shorter than <italic>R. raggattensis</italic> (Fig. <xref ref-type="fig" rid="Ch1.F10"/>y; Table <xref ref-type="table" rid="Ch1.T2"/>).  Fragmented <italic>R. raggattensis</italic> apices are distinguishable from <italic>R. diploneides</italic> because the apices have a narrower taper to the central area than <italic>R. diploneides</italic>. The alveoli and interior structure of <italic>Rouxia raggattensis</italic> are comparable to other <italic>Rouxia</italic> species.  The keyhole-shaped alveoli are notable on apices of <italic>Rouxia antarctica</italic>, <italic>Rouxia isopolica</italic>, and <italic>Rouxia leventerae</italic> (Fig. <xref ref-type="fig" rid="Ch1.F12"/>c–f). Interior views of <italic>Rouxia antarctica</italic> also have similar features to <italic>R. raggattensis</italic> (Fig. <xref ref-type="fig" rid="Ch1.F11"/>g and h).</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Biostratigraphic and paleoceanographic applications</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><?xmltex \opttitle{Clavate \textit{Fragilariopsis} evolution, regional occurrences, and environmental affinities}?><title>Clavate <italic>Fragilariopsis</italic> evolution, regional occurrences, and environmental affinities</title>
      <p id="d1e3617">Clavate <italic>Fragilariopsis</italic> species diversified in the late Pliocene in the Southern Ocean.  <italic>Fragilariopsis clava</italic> appears to have evolved from <italic>F. clementia</italic> based on transitional forms at Site U1361.  The evolutionary relationships between <italic>F. clava</italic>, <italic>F. armandae</italic>, and <italic>F. heardensis</italic> are more difficult to discern.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><?xmltex \currentcnt{15}?><?xmltex \def\figurename{Figure}?><label>Figure 15</label><caption><p id="d1e3641"><italic>Fragilariopsis</italic> c.f. <italic>clementia</italic>, <italic>F. clementia–F. clava</italic> transitional form, and <italic>F. clava</italic> light micrographs. The scale bar for all images is 10 <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m.  The black box encloses specimens from ODP Site 1138 reproduced from Bohaty et al. (2003) Plate 2 (Fig. 1a: <italic>F. heardensis</italic> (holotype); Fig. 6: <italic>F. heardensis</italic>; and Fig. 8: <italic>F. clementia)</italic> and Plate 3 (Fig. 9: <italic>F. heardensis</italic>).  <bold>(a)</bold> <italic>F.</italic> c.f. <italic>clementia</italic>, U1361A-8H3 72–74 cm. <bold>(b)</bold> <italic>F.</italic> c.f. <italic>clementia</italic>, U1361A-8H3 72–74 cm. <bold>(c)</bold> <italic>F.</italic> c.f. <italic>clementia</italic>, U1361A-8H3 72–74 cm. <bold>(d)</bold> <italic>F.</italic> c.f. <italic>clementia</italic>, U1361A-7H2 22–24 cm. <bold>(e)</bold> <italic>F. clementia–F. clava</italic> transitional form, U1361A-7H2 22–24 cm. <bold>(f)</bold> <italic>F. clementia–F. clava</italic> transitional form, U1361A-7H1 92–94 cm. <bold>(g)</bold> <italic>F. clava</italic> U1361A-6H7 42–44 cm. <bold>(h)</bold> <italic>F.</italic> c.f. <italic>heardensis</italic>, U1361A-6H5 12–14 cm. <bold>(i)</bold> <italic>F. clava</italic>, U1361A-6H7 32–34 cm, to which the Bohaty et al. (2003) specimen (9) has a similar valve outline. </p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f15.jpg"/>

        </fig>

      <?pagebreak page152?><p id="d1e3755"><italic>Fragilariopsis clementia</italic> is most commonly observed in Southern Ocean sediments dated between 7–4 Ma (total age range: 10–3 Ma; see Fig. <xref ref-type="fig" rid="Ch1.F14"/>).  The taxon has a wide geographical distribution and two morphological endmembers (Fig. <xref ref-type="fig" rid="Ch1.F14"/>).   The major apex of the elongate endmember has parallel sides, whereas shorter species may be convex <xref ref-type="bibr" rid="bib1.bibx22" id="paren.41"/>.  Both endmembers are present in Fig. <xref ref-type="fig" rid="Ch1.F14"/>, which presents <italic>F. clementia</italic> specimens by site and gives an estimated age based on published age models <xref ref-type="bibr" rid="bib1.bibx22 bib1.bibx21 bib1.bibx8 bib1.bibx6 bib1.bibx25 bib1.bibx23" id="paren.42"/>.  Specimens selected to be included in a publication serve as a representation of what authors identified as <italic>F. clementia</italic> at a given location.  <italic>Fragilariopsis clementia</italic> in the vicinity of the Drake Passage and the Weddell Sea appears to present most frequently in an elongate form with rounded apices <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx22 bib1.bibx21" id="paren.43"><named-content content-type="pre">e.g.,</named-content></xref>.  In comparison, <italic>F. clementia</italic> from the Indo-Pacific presents with a convex valve face and a wider, more angular, and cuneate board apex <xref ref-type="bibr" rid="bib1.bibx6" id="paren.44"><named-content content-type="pre">e.g.,</named-content></xref>. It is possible that the observed regional differences are due to author bias, change in <italic>F. clementia</italic> species concepts over time, or an evolution of the taxon.  However, the sites exhibiting more elongate <italic>F. clementia</italic> are sourced from papers authored by different scientists and published in different decades.  While out of the scope of this paper, a deeper investigation into <italic>F. clementia</italic> morphologies may be fruitful if original site material was revisited to make observations using a light microscope and SEM.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F16" specific-use="star"><?xmltex \currentcnt{16}?><?xmltex \def\figurename{Figure}?><label>Figure 16</label><caption><p id="d1e3808">Relative abundance of clavate species by ODP and IODP site. Site numbers and specifications are given in Appendix Tables <xref ref-type="table" rid="App1.Ch1.S1.T3"/> and <xref ref-type="table" rid="App1.Ch1.S1.T4"/>.  Symbols at each site represent the relative abundance given by the literature: large red circles denote a few occurrences, black circles indicate rare abundances, and solid yellow circles show where there were trace or scarce occurrences or single-specimen observations. </p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f16.jpg"/>

        </fig>

      <?pagebreak page153?><p id="d1e3821">Although <italic>F. clementia</italic> was previously identified at Site U1361 between 70.04–57.19 m.b.s.f. (3.17–2.8 Ma) <xref ref-type="bibr" rid="bib1.bibx53" id="paren.45"/>, this occurrence is much younger than the established taxon ranges for both morphological endmembers  <xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx16" id="paren.46"/>.  Constrained optimization has been used to model the last appearance of <italic>F. clementia</italic>, with the average range model placing the datum between 4.6–4.0 Ma and the total range model placing it around 2.37–2.34 Ma <xref ref-type="bibr" rid="bib1.bibx11 bib1.bibx16" id="paren.47"/>.  In the course of our work documenting new clavate <italic>Fragilariopsis</italic> taxa from Site U1361, we have re-examined the original sides and determined that these younger specimens should be reclassified as <italic>F.</italic> c.f. <italic>clementia</italic>.  Specimens have angular apices and valve outlines that resemble the <italic>F. clementia</italic> specimens identified by <xref ref-type="bibr" rid="bib1.bibx6" id="text.48"/> in mid-Pliocene sediments collected from the Kerguelen Plateau in the Indian Ocean, but they also have a broad minor apex and coarse striae similar to the morphology of <italic>F. clava</italic> sp. nov.  The first occurrence of  <italic>F.</italic> c.f. <italic>clementia</italic>  at Site U1361 at 70.04 m b.s.f. (<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3.17</mml:mn></mml:mrow></mml:math></inline-formula> Ma) corresponds to the mid-Pliocene warm interval at MIS KM3 (Fig. <xref ref-type="fig" rid="Ch1.F17"/>).   <italic>Fragilariopsis</italic> c.f. <italic>clementia</italic> is next observed at Site U1361 during a prolonged period of productivity from 2.84–2.8 Ma (58.14–57.19 m b.s.f.).  The last occurrence occurs at 54.24 m b.s.f. (<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.72</mml:mn></mml:mrow></mml:math></inline-formula> Ma) as one specimen.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F17" specific-use="star"><?xmltex \currentcnt{17}?><?xmltex \def\figurename{Figure}?><label>Figure 17</label><caption><p id="d1e3896">Abundance of <italic>R. raggattensis</italic>, <italic>F. clava</italic>, and other clavate <italic>Fragilariopsis</italic> species. Absolute and relative abundance of <italic>R. raggattensis</italic>, <italic>F. clava</italic>, <italic>F. armandae</italic>,  and other relevant species.  <bold>(a)</bold> The paleomagnetic reversal stratigraphy at Site U1361 <xref ref-type="bibr" rid="bib1.bibx19" id="paren.49"/>. <bold>(b)</bold> Site U1361 shipboard natural gamma radiation (NGR; counts) <xref ref-type="bibr" rid="bib1.bibx19" id="paren.50"/>. <bold>(c)</bold> Absolute abundance of total diatoms counted at Site U1361 and species of interest. <bold>(d)</bold> Relative abundance of species of interest that were identified during diatom counts. <bold>(e)</bold> Benthic oxygen isotope (<inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mn mathvariant="normal">18</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>O) stack of <xref ref-type="bibr" rid="bib1.bibx30" id="text.51"/>.  Low NGR denotes lower clay content which is potentially linked to higher biological deposition.  The light-blue shaded areas highlight intervals in which NGR is lower than 34, the threshold used by <xref ref-type="bibr" rid="bib1.bibx52" id="text.52"/> to indicate times of higher productivity.  More positive <inline-formula><mml:math id="M106" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula><sup>18</sup>O values indicate cooler conditions.  Marine Isotope Stages corresponding to low NGR are given to the far right.  The absolute and relative abundance between 84.94–56.53 m b.s.f. were completed by <xref ref-type="bibr" rid="bib1.bibx53" id="text.53"/>. </p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f17.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F18" specific-use="star"><?xmltex \currentcnt{18}?><?xmltex \def\figurename{Figure}?><label>Figure 18</label><caption><p id="d1e3978"><italic>Rouxia raggattensis</italic> relative abundance at Site U3161 and AND-1B. AND-1B lithology sourced from McKay et al. (2012).  <bold>(a)</bold> Site U1361 paleomagnetic reversal stratigraphy <xref ref-type="bibr" rid="bib1.bibx19" id="paren.54"/>, graphical lithology, and <italic>R. raggattensis</italic> relative abundance (blue bars). <bold>(b)</bold> Benthic oxygen isotope stack of <xref ref-type="bibr" rid="bib1.bibx30" id="text.55"/>. <bold>(c)</bold> Site AND-1B magnetostratigraphy, graphical lithology, and <italic>R. raggattensis</italic> and <italic>Rouxia</italic> spp. (pink bars) relative abundance <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx40 bib1.bibx50" id="paren.56"/>. AND-1B diatom units (DU) are labeled in the lithology.  The relative abundance measurements between 84.94–56.53 m b.s.f. were completed by <xref ref-type="bibr" rid="bib1.bibx53" id="text.57"/>.  The relative abundance of undifferentiated <italic>Rouxia</italic> spp. in AND-1B sediments is also shown because this may include unidentified <italic>R. raggattensis</italic> fragments. </p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://jm.copernicus.org/articles/43/139/2024/jm-43-139-2024-f18.png"/>

        </fig>

      <p id="d1e4027">It is more difficult to determine when <italic>F. heardensis</italic> and <italic>F. armandae</italic> evolved in relation to <italic>F. clava</italic>.  Both species are present at Site U1361 between MIS 101–97 (<inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.6</mml:mn></mml:mrow></mml:math></inline-formula>–2.47 Ma), while characteristically robust <italic>F. clava</italic> specimens are present at Site U1361 during MIS G7 at <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.73</mml:mn></mml:mrow></mml:math></inline-formula> Ma (Fig. <xref ref-type="fig" rid="Ch1.F17"/>) alongside endmembers with finer costae.  The paper that formally describes <italic>F. heardensis</italic>, Bohaty et al. 2003, is the only literature that explicitly lists <italic>F. heardensis</italic> in its diatom assemblage at ODP Site 1138 on the Kerguelen Plateau in the Indian sector of the Southern Ocean. <xref ref-type="bibr" rid="bib1.bibx6" id="text.58"/> originally identified two morphotypes for <italic>F. heardensis</italic>: the holotype (Plate 2 Fig. 1a and b; shown in Fig. <xref ref-type="fig" rid="Ch1.F15"/>) and the specimens that more closely resemble <italic>F. armandae</italic> (Plate 2 Figs. 2–3 and Plate 3 Fig. 9; example in Fig. <xref ref-type="fig" rid="Ch1.F15"/>).  The latter morphotype shares a constricted center and possible medial bulge with <italic>F. armandae</italic>.  However, one specimen (Bohaty et al., 2003 Plate 3 Fig. 9) is biseriate in the center, and all specimens have 9–10 costae, characteristics more comparable to <italic>F. clava</italic> than <italic>F. armandae</italic>.  We suggest these specimens could be reclassified as <italic>F. armandae</italic> or <italic>F.</italic> c.f. <italic>armandae</italic>.  All three specimens are from the same sample (138-1138A-8R-CC) dated about 3 Ma, approximately 0.2–0.3 Ma older than the holotype <italic>F. heardensis</italic> presented by Bohaty (138-113A-8R-5, 100–101 cm).  The age difference between the appearance of <italic>F. clava</italic> and <italic>F. heardensis</italic> at Site U1361 is also about 0.2–0.3 Ma.</p>
      <?pagebreak page154?><p id="d1e4114">The <italic>Fragilariopsis heardensis</italic> <xref ref-type="bibr" rid="bib1.bibx6" id="text.59"/> holotype is a similar age to trace occurrences of <italic>F. efferans</italic> or <italic>F.</italic> c.f. <italic>efferans</italic> recorded in the late Pliocene by older literature records, although the diatom taxon is typically observed in middle Miocene sediments <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx21 bib1.bibx47" id="paren.60"><named-content content-type="pre"><inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">14.5</mml:mn></mml:mrow></mml:math></inline-formula>–11 Ma;</named-content></xref>.  Because <italic>F. efferans</italic> has not been found in Late Miocene (10–6 Ma) sediments <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx10 bib1.bibx21 bib1.bibx23 bib1.bibx47" id="paren.61"/>, we suggest that traces of <italic>F. efferans</italic> in the Pliocene are either reworked Middle Miocene specimens or misidentified Pliocene clavate species.  <xref ref-type="bibr" rid="bib1.bibx22" id="text.62"/> identified a specimen as <italic>F.</italic> c.f. <italic>efferans</italic> from ODP Site 328 located in the outer Malvinas Basin at <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.9</mml:mn></mml:mrow></mml:math></inline-formula>–2.8 Ma, which has the characteristic morphology of <italic>F. heardensis</italic>.  Other examples of Pliocene <italic>F. efferans</italic> come from late Pliocene sediment (3.8–2.6 Ma) collected from ODP sites 747 and 748 on the Kerguelen Plateau <xref ref-type="bibr" rid="bib1.bibx23" id="paren.63"/> and from mid-Pliocene sediments (<inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">4.5</mml:mn></mml:mrow></mml:math></inline-formula> Ma) from ODP Site 1092 <xref ref-type="bibr" rid="bib1.bibx9" id="paren.64"/>.   <italic>Fragilariopsis heardensis</italic> is less common than <italic>F. clementia</italic>, but its geographical distribution expands to cover a similar area to <italic>F. clementia</italic> (Fig. <xref ref-type="fig" rid="Ch1.F16"/>) if alternative identifications from older literature are considered.</p>
      <?pagebreak page155?><p id="d1e4210">The origination and extinction of <italic>F. clava</italic>, <italic>F. armandae</italic>, <italic>F. heardensis</italic>, and transitional forms occurred during a period of pronounced diatom species turnover between 3–2 Ma, related to changing climate conditions <xref ref-type="bibr" rid="bib1.bibx16" id="paren.65"/>.  Although clavate <italic>Fragilariopsis</italic> species are not common in Southern Ocean sediments, they are observed in trace to rare amounts in the region affected by the Antarctic Circumpolar Current (ACC) (Fig. <xref ref-type="fig" rid="Ch1.F16"/>).  Miocene and early Pliocene taxa thrived in relatively warm open-ocean conditions impacted by the ACC.  Temperatures were warmer and CO<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentrations higher during the Miocene and early- to mid-Pliocene <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx48 bib1.bibx44 bib1.bibx60" id="paren.66"/>.  Pliocene occurrences of  <italic>F.</italic> c.f. <italic>clementia</italic>  at Site U1361 have been indirectly associated with warmer subantarctic waters circulating southward, closer to the Antarctic continental margin  <xref ref-type="bibr" rid="bib1.bibx53" id="paren.67"/>.  The Wilkes Land continental rise is situated to the east and south of the Kerguelen Plateau and is a place where regional bathymetry constricts the eastward-flowing ACC to a more southerly position <xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx36" id="paren.68"/>.  The onset of cooler sea surface temperatures and increased sea ice in the late Pliocene may have marginalized clavate <italic>Fragilariopsis</italic> species and facilitated their extinction and the extinction of many other diatom species <xref ref-type="bibr" rid="bib1.bibx16" id="paren.69"/>.  We speculate that <italic>F. clava</italic>, <italic>F. armandae</italic>, and <italic>F. heardensis</italic> evolved as the clavate <italic>Fragilariopsis</italic> lineage attempted to adapt to cooling climate conditions in the Southern Ocean, ultimately unsuccessfully.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><?xmltex \opttitle{\textit{Rouxia raggattensis} age constraints}?><title><italic>Rouxia raggattensis</italic> age constraints</title>
      <p id="d1e4286"><italic>Rouxia raggattensis</italic> persisted from at least the mid-Pliocene through to the Early Pleistocene.  To better constrain the first appearance of <italic>R. raggattensis</italic>, we compare the occurrences from Site U1361 to occurrences from ANDRILL core AND-1B (Fig. <xref ref-type="fig" rid="Ch1.F18"/>).  Samples from U1361 were examined down to 94.9 m b.s.f. (4.05 Ma), and possible trace fragments of <italic>R. raggattensis</italic> were identified, although poor preservation generates some uncertainty in identification. In AND-1B, <italic>R. raggattensis</italic> was consistently present in three diatom units (VIII, IX, and XI) in trace amounts (maximum relative abundance: 3.67 %) from approximately 3.6–3.0 Ma <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx40 bib1.bibx50" id="paren.70"/> (Fig. <xref ref-type="fig" rid="Ch1.F18"/>).  <italic>Rouxia raggattensis</italic> was not identified below an unconformity at 440 m b.s.f. in diatom unit XI, which corresponds to an approximately 0.7 Ma time gap between 3.64 to 4.34 Ma <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx45" id="paren.71"/>. The unconformity prevents observing the first occurrence of <italic>R. raggattensis</italic> in the Ross Sea and Wilkes Land area, but we propose <italic>R. raggattensis</italic> evolved sometime between 4.3–4.05 Ma based on its occurrence in sediments from U1361 and AND-1B.</p>
      <p id="d1e4320">The abundance of <italic>Rouxia raggattensis</italic> is not constant at Site U1361. Relative abundance is low from 4.05 until 3.15 Ma (64.94 m b.s.f.), about MIS G21, when the relative abundance exceeds 5 %.  The absolute abundance also increases slightly during MIS G21 followed by a dramatic increase at 2.81 Ma (MIS G9).  <italic>Rouxia raggattensis</italic> becomes a significant secondary species, reaching a maximum relative abundance of 26.9 % at 2.74 Ma (55.14 m b.s.f.) and maximum absolute abundance at 2.44 Ma (46.34 m b.s.f.); from <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.16</mml:mn></mml:mrow></mml:math></inline-formula> Ma (39.92 m b.s.f.), its abundance rapidly declines.  The decrease in abundance of <italic>R. raggattensis</italic> suggests that environmental conditions along the Wilkes Land margin became progressively less favorable as Pleistocene cooling progressed.  <italic>Rouxia raggattensis</italic> briefly reappears in the youngest U1361 sample examined in this study, 1.76 Ma (31.83 m b.s.f.), in low relative abundances (1.9 %).</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><?xmltex \opttitle{\textit{Rouxia raggattensis} regional and environmental occurrences}?><title><italic>Rouxia raggattensis</italic> regional and environmental occurrences</title>
      <?pagebreak page156?><p id="d1e4356">The maximum abundance of <italic>R. raggattensis</italic> coincides with a dynamic period (2.8–2.4 Ma) of instability in Antarctic and Southern Ocean conditions <xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx24 bib1.bibx35 bib1.bibx16 bib1.bibx52 bib1.bibx5" id="paren.72"/> during which Northern Hemisphere glaciation intensified <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx26 bib1.bibx30 bib1.bibx34 bib1.bibx39 bib1.bibx49" id="paren.73"/>.  By summing the rate of diatom extinction and origination, <xref ref-type="bibr" rid="bib1.bibx16" id="text.74"/> identified five periods of major species turnover in the last 15 Ma, including from 2–3 Ma.  Diatom speciation is sensitive to sea ice extent; non-ice-adapted species are marginalized when open-water niches south of the Polar Front are lost to expanding sea ice <xref ref-type="bibr" rid="bib1.bibx16" id="paren.75"/>.  However, as other diatom species went extinct as surface conditions cooled, <italic>R. raggattensis</italic> seems to have thrived, particularly when sea ice was present.  At Site U1361, <italic>R. raggattensis</italic> is strongly correlated (<inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.78</mml:mn></mml:mrow></mml:math></inline-formula>) with <italic>Fragilariopsis sublinearis</italic>, an extant species associated with locations with 7 or more months of sea ice a year <xref ref-type="bibr" rid="bib1.bibx1" id="paren.76"/>.  Relative abundances of <italic>F. sublinearis</italic> greater than 2 % are correlated to places with winter sea ice, such as the Ross Sea, Prydz Bay, Wilkes Land, and the Weddell Sea <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx7" id="paren.77"/>.  <italic>Rouxia raggattensis</italic> reached a maximum relative abundance (26.92 %) at <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.74</mml:mn></mml:mrow></mml:math></inline-formula> Ma (55.14 m b.s.f. in MIS G7), close to a major cooling step recorded in deep-sea temperatures at 2.73 Ma associated with the intensification of Northern Hemisphere glaciation <xref ref-type="bibr" rid="bib1.bibx30 bib1.bibx41 bib1.bibx59" id="paren.78"/>.  Furthermore, the relative abundance of <italic>R. raggattensis</italic> decreased dramatically at <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.16</mml:mn></mml:mrow></mml:math></inline-formula> Ma (39.92 m b.s.f.), at about the same time as a reduction in iceberg calving <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx41" id="paren.79"/> and an inferred reduction in the extent of sea ice.  We therefore surmise that <italic>R. raggattensis</italic> was a sea-ice-affiliated species that preferred surface water conditions dominated by cold temperatures.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <?pagebreak page158?><p id="d1e4452">This paper describes three new diatom taxa: <italic>Fragilariopsis clava</italic> sp. nov. Duke; <italic>Fragilariopsis armandae</italic> sp. nov. Frazer, Duke et Riesselman; and <italic>Rouxia raggattensis</italic> sp. nov. Duke et Riesselman.  <italic>Fragilariopsis clava</italic>, distinguishable by a robust clavate valve face with coarse costae, existed briefly at Site U1361 during Marine Isotope Stage G7, around 2.74 Ma.  Transitional forms provide evolutionary links between <italic>F. clava</italic> sp. nov. and <italic>F. clementia</italic> Gombos.  <italic>Fragilariopsis armandae</italic> is present at Site U1361 during the same Marine Isotope Stages, MIS 101–97 (<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2.68</mml:mn></mml:mrow></mml:math></inline-formula>–2.47 Ma), as <italic>F. heardensis</italic>.  We speculate that <italic>F. armandae</italic> and <italic>F. heardensis</italic> evolved from the same branching point that separated uniseriate clavate <italic>Fragilariopsis</italic> species from biseriate species (e.g., <italic>F. clava</italic>).  Although present throughout the Pliocene-Pleistocene sediments examined for this study, <italic>R. raggattensis</italic> sp. nov. was more abundant from about 3–2 Ma when the Southern Ocean underwent significant cooling.  <italic>Rouxia raggattensis</italic> appears to be associated with sea ice conditions based on its strong correlation with <italic>F. sublinearis</italic>, an extant Southern Ocean species.  We speculate that <italic>R. raggattensis</italic> first appeared at Site U1361 between 4.3–4.05 Ma and last occurred between 2–2.2 Ma.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<?pagebreak page159?><app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Appendix A</title>

<?xmltex \floatpos{h!}?><table-wrap id="App1.Ch1.S1.T3"><?xmltex \currentcnt{A1}?><label>Table A1</label><caption><p id="d1e4530">Sites with recorded abundances of clavate <italic>Fragilariopsis</italic> species in the Southern Ocean.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Species</oasis:entry>
         <oasis:entry colname="col2">Sites</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. clava</italic></oasis:entry>
         <oasis:entry colname="col2">U1361</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. armandae</italic></oasis:entry>
         <oasis:entry colname="col2">U1361</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. heardensis</italic></oasis:entry>
         <oasis:entry colname="col2">U1361, 1138, 328</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. clementia</italic></oasis:entry>
         <oasis:entry colname="col2">689, 690, 696, 704, 748, 751, 1092, 1095, 1097</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. lacrima</italic></oasis:entry>
         <oasis:entry colname="col2">689, 690, 693, 694, 697, 704, 751, 1065, 1092</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. efferans</italic></oasis:entry>
         <oasis:entry colname="col2">278, 512, 689, 690, 696, 747, 748, 1092</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><italic>F. claviceps</italic></oasis:entry>
         <oasis:entry colname="col2">512, 689, 690, 693, 694, 696, 748, 1092</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{A1}?></table-wrap>

<?xmltex \floatpos{h!}?><table-wrap id="App1.Ch1.S1.T4"><?xmltex \hack{\hsize\textwidth}?><?xmltex \currentcnt{A2}?><label>Table A2</label><caption><p id="d1e4635">DSDP, ODP, and IODP site location.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Site</oasis:entry>
         <oasis:entry colname="col2">Location</oasis:entry>
         <oasis:entry colname="col3">Water depth</oasis:entry>
         <oasis:entry colname="col4">Paper</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">(m)</oasis:entry>
         <oasis:entry colname="col4"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">U1361</oasis:entry>
         <oasis:entry colname="col2">64°24.54<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 143°53.20<inline-formula><mml:math id="M119" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Wilkes Land margin</oasis:entry>
         <oasis:entry colname="col3">3454</oasis:entry>
         <oasis:entry colname="col4">This study</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">278</oasis:entry>
         <oasis:entry colname="col2">56°33.42<inline-formula><mml:math id="M120" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 160°04.29<inline-formula><mml:math id="M121" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; SW Pacific basin south of Campbell Plateau</oasis:entry>
         <oasis:entry colname="col3">3675</oasis:entry>
         <oasis:entry colname="col4">Schrader (1976)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">328</oasis:entry>
         <oasis:entry colname="col2">49°°48.67<inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 36°39.53<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; outer Malvinas Basin</oasis:entry>
         <oasis:entry colname="col3">5013</oasis:entry>
         <oasis:entry colname="col4">Gombos (1976)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">512</oasis:entry>
         <oasis:entry colname="col2">49°52.19<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 40°50.71<inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; northeastern Maurice Ewing Bank</oasis:entry>
         <oasis:entry colname="col3">1846</oasis:entry>
         <oasis:entry colname="col4">Ciesielski (1983)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">689</oasis:entry>
         <oasis:entry colname="col2">64°31.01<inline-formula><mml:math id="M126" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 3°5.99<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Maud Rise</oasis:entry>
         <oasis:entry colname="col3">2080</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">690</oasis:entry>
         <oasis:entry colname="col2">65°9.63<inline-formula><mml:math id="M128" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 1°12.30<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Maud Rise</oasis:entry>
         <oasis:entry colname="col3">2914</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">693</oasis:entry>
         <oasis:entry colname="col2">70°49.9<inline-formula><mml:math id="M130" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 14°34.4<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; East Antarctic margin with Weddell Sea</oasis:entry>
         <oasis:entry colname="col3">2359</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">694</oasis:entry>
         <oasis:entry colname="col2">66°50.8<inline-formula><mml:math id="M132" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 33°26.8<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; Weddell Sea abyssal plain</oasis:entry>
         <oasis:entry colname="col3">4653</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">696</oasis:entry>
         <oasis:entry colname="col2">61°50.9<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 42°56<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; southeast margin of South Orkney microcontinent</oasis:entry>
         <oasis:entry colname="col3">650</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">697</oasis:entry>
         <oasis:entry colname="col2">61°48.6<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 40°17.3<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> W; Jane Basin</oasis:entry>
         <oasis:entry colname="col3">3480</oasis:entry>
         <oasis:entry colname="col4">Gersonde and Burckle (1990)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">704</oasis:entry>
         <oasis:entry colname="col2">46°52.75<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 07°25.25<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; South Atlantic Ocean</oasis:entry>
         <oasis:entry colname="col3">2541</oasis:entry>
         <oasis:entry colname="col4">Censarek and Gersonde (2002)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">747</oasis:entry>
         <oasis:entry colname="col2">54°48.68<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 76°47.64<inline-formula><mml:math id="M141" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Kerguelen Plateau</oasis:entry>
         <oasis:entry colname="col3">1695</oasis:entry>
         <oasis:entry colname="col4">Harwood and Maruyama (1992)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">748</oasis:entry>
         <oasis:entry colname="col2">58°26.45<inline-formula><mml:math id="M142" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 78°58.89<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Kerguelen Plateau</oasis:entry>
         <oasis:entry colname="col3">1291</oasis:entry>
         <oasis:entry colname="col4">Harwood and Maruyama (1992)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">751</oasis:entry>
         <oasis:entry colname="col2">57°43.56<inline-formula><mml:math id="M144" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 79°48.89<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Kerguelen Plateau</oasis:entry>
         <oasis:entry colname="col3">1634</oasis:entry>
         <oasis:entry colname="col4">Harwood and Maruyama (1992)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">1065</oasis:entry>
         <oasis:entry colname="col2">68°22.80<inline-formula><mml:math id="M146" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 67°13.14<inline-formula><mml:math id="M147" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Wild Drift offshore Prydz Bay</oasis:entry>
         <oasis:entry colname="col3">3538</oasis:entry>
         <oasis:entry colname="col4">Whitehead and Bohaty (2003)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">1092</oasis:entry>
         <oasis:entry colname="col2">46°24.70<inline-formula><mml:math id="M148" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 07°04.79<inline-formula><mml:math id="M149" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Meteor Rise</oasis:entry>
         <oasis:entry colname="col3">1974</oasis:entry>
         <oasis:entry colname="col4">Censarek and Gersonde (2002)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">1138</oasis:entry>
         <oasis:entry colname="col2">53°33<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 75°58<inline-formula><mml:math id="M151" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E; Kerguelen Plateau</oasis:entry>
         <oasis:entry colname="col3">1141</oasis:entry>
         <oasis:entry colname="col4">Bohaty et al. (2003)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">AND-1B</oasis:entry>
         <oasis:entry colname="col2">77°53.4<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> S, 167°0.054<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> E, Ross Sea</oasis:entry>
         <oasis:entry colname="col3">936</oasis:entry>
         <oasis:entry colname="col4">Riesselman and Dunbar (2013)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><?xmltex \gdef\@currentlabel{A2}?></table-wrap>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="codeavailability"><title>Code availability</title>

      <p id="d1e5288">The ImageJ software is free to access online at <uri>https://imagej.net/downloads</uri>, and users should cite Schneider et al. (2012).</p>
  </notes><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5297">The absolute abundance and morphometric measurements of <italic>R. raggattensis</italic>, <italic>F. clava</italic>, and <italic>F. armandae</italic> are available as an Excel file in the Supplement.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e5309">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/jm-43-139-2024-supplement" xlink:title="zip">https://doi.org/10.5194/jm-43-139-2024-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5318">GD and JF completed diatom counts and morphometric measurements for Expedition 318 samples.  BTS counted <italic>Rouxia raggattensis</italic> fragments and other diatom taxa for depths 83.99–56.53 m b.s.f.  CR provided ANDRILL samples and shipboard samples and data from IODP Expeditions 318 and 383. GD, JF, and CR developed species concepts and prepared formal definitions.  GD wrote the paper with input from JF and CR.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5327">At least one of the (co-)authors is a member of the editorial board of <italic>Journal of Micropaleontology</italic>. The peer-review process was guided by an independent editor, and the authors also have no other competing interests to declare.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e5336">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors.</p>
  </notes><notes notes-type="sistatement"><title>Special issue statement</title>

      <p id="d1e5342">This article is part of the special issue “Advances in Antarctic chronology, paleoenvironment, and paleoclimate using microfossils: Results from recent coring campaigns”. It is not associated with a conference.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5348">Samples were provided by the International Ocean Discovery Program (IODP) Gulf Coast Repository.    We thank the Australia and New Zealand IODP Consortium (ANZIC); the U.S. Science Support Program; and the science parties, technical support, and platform operators at IODP Expedition 318 and 383 for enabling this work.  We are grateful to Marianne Negrini for assistance using the SEM. Finally, we celebrate the life and legacy of  Leanne Armand (1968–2022), whose excellence in the field of diatom micropaleontology and leadership as Director of ANZIC left a lasting impression on all who had the privilege of working alongside her. Leanne Armand, you are deeply missed.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e5354">This research has been supported by the Marsden Fund (grant no. UOO-1315) and the Ministry for Business Innovation and Employment Antarctic Science Platform (grant no. ANTA1801). The authors received support from a Royal Society of New Zealand Marsden Fund Fast-Start (grant UOO-1315) to Christina Riesselman, a University of Otago Doctoral Scholarship to Grace Duke, and University of Otago undergraduate summer research scholarships to Josie Frazer.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5360">This paper was edited by David Harwood and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><?xmltex \def\ref@label{{Armand et~al.(2005)Armand, Crosta, Romero, and Pichon}}?><label>Armand et al.(2005)Armand, Crosta, Romero, and Pichon</label><?label Armand2005?><mixed-citation>Armand, L. K., Crosta, X., Romero, O., and Pichon, J. J.: The biogeography of major diatom taxa in Southern Ocean sediments: 1. Sea ice related species, Palaeogeogr. Palaeocl., 223, 93–126, <ext-link xlink:href="https://doi.org/10.1016/j.palaeo.2005.02.015" ext-link-type="DOI">10.1016/j.palaeo.2005.02.015</ext-link>, 2005.</mixed-citation></ref>
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